SUPERLINK
version 1.7

Superlink Online SNP 

The Superlink online version is the recommended way to use Superlink. This version is easy to use, provides many features not available in the standalone version and performs massively parallel computations using thousands of CPUs.

Last Updated -  November 11, 2008
 

Background

        Genetic linkage analysis is a statistical method that is used to associate functionality of genes to their location on chromosomes.  The main idea is that markers which are found in vicinity on the chromosome have a tendency to stick together when passed on to offsprings.  Thus, if some disease is often passed to offsprings along with specific markers, then it can be concluded that the gene(s) which are responsible for the disease are located close on the chromosome to these markers.
        Superlink is a computer program that performs exact genetic linkage analysis with input-output relationships similar to those in  standard genetic linkage programs Linkage, Fastlink v4.1, Tlinkage, Vitesse v2.0, and Genehunter v2.1.  Superlink can run larger files than previous programs.
 

Features of Superlink


Modifications introduced into Version 1.7

Experimental Results

Experimental results of Version 1.7 (updated Nov 11, 2008).
 

Executables (Version 1.7)

    You can also use Superlink without downloading it via a simple web interface Superlink-online which is faster due to the use of thousands of computers worldwide.


Format of Input Files

        Superlink's input format is almost the same as that of Linkage/Fastlink (see Linkage User's Guide) except for Superlink's additional options. The input format for two-loci traits is identical to the one used by Tlinkage. The two additional program options of Superlink require a slightly modified input format which is explained in more detail in Format of Locus file. Some options of Linkage/Fastlink have not been implemented, as detailed in Format of Locus file.

        There are two input files. One file describes the loci being analyzed (locus file).  The second file holds information regarding the pedigree (pedigree file).


Operating Instructions


Previous Versions


Publication References


Helpdesk

For comments and bug reports please send email to superlink-online.
You can use Superlink also via a simple web interface without downloading it at Superlink-online.
 


Written by Ma'ayan Fishelson.