Haplotyping results from Superlink v1.4, by Fishelson and Geiger (2004).

Input files: pedfile-expA.dat, datafile-expA.dat.
The results for pedigree no. 1.

PERSON	FATHER	MOTHER	SEX	MARKERS
========================================
P 1	--	--	F	5	4	4	1	3	2	2	1	5	2	
+ 				-------------------------------------------------------------------------
M 1	--	--	F	1	4	4	5	3	2	3	5	5	4	


P 2	--	--	M	3	4	1	1	2	2	1	4	2	4	
+ 				-------------------------------------------------------------------------
M 2	--	--	M	4	1	4	3	2	2	1	4	2	4	


P 3	--	--	M	5	4	4	1	3	2	2	2	5	1	
+ 				-------------------------------------------------------------------------
M 3	--	--	M	4	4	4	1	3	2	3	2	5	1	


P 4	2	1	F	3	4	1	1	2	2	1	4	2	4	
+ 				-------------------------------------------------------------------------
M 4	2	1	F	1	4	4	5	3	2	3	5	5	4	


P 5	2	1	M	4	1	4	3	2	2	1	4	2	4	
+ 				-------------------------------------------------------------------------
M 5	2	1	M	5	4	4	1	3	2	2	1	5	2	


P 6	--	--	F	1	2	2	1	1	1	1	1	1	3	
+ 				-------------------------------------------------------------------------
M 6	--	--	F	4	5	1	4	2	5	5	2	5	2	


P 7	3	4	F	4	4	4	1	3	2	3	2	5	1	
+ 				-------------------------------------------------------------------------
M 7	3	4	F	3	4	1	1	2	2	1	4	2	4	


P 8	3	4	F	5	4	4	1	3	2	2	2	5	1	
+ 				-------------------------------------------------------------------------
M 8	3	4	F	1	4	4	5	3	2	3	5	5	4	


P 9	3	4	M	4	4	4	1	3	2	3	2	5	1	
+ 				-------------------------------------------------------------------------
M 9	3	4	M	3	4	1	1	2	2	1	4	2	4	


P 10	--	--	F	1	3	3	1	3	5	4	5	4	5	
+ 				-------------------------------------------------------------------------
M 10	--	--	F	5	1	2	2	5	2	5	5	3	3	


P 11	5	6	M	5	4	4	1	3	2	2	1	5	4	
+ 				--------------------------------------------------------------------^----
M 11	5	6	M	4	5	1	4	2	5	5	2	5	2	


P 12	5	8	M	4	1	4	3	2	2	1	4	2	4	
+ 				-------------------------------------------------------------------------
M 12	5	8	M	5	4	4	1	3	2	2	2	5	1	


P 13	5	8	F	5	4	4	1	3	2	2	1	5	2	
+ 				----v---------------------------------------v----------------------------
M 13	5	8	F	1	4	4	1	3	2	3	5	5	4	


P 14	11	10	F	5	4	4	1	3	2	2	1	5	4	
+ 				-------------------------------------------------------------------------
M 14	11	10	F	5	1	2	2	5	2	5	5	3	3	


P 15	11	10	F	5	4	4	1	3	2	2	1	5	2	
+ 				------------------------------------------------------------^------------
M 15	11	10	F	1	3	3	1	3	5	4	5	4	5	


P 16	11	10	M	5	4	4	1	3	2	2	2	5	2	
+ 				----------------------------------------------------^--------------------
M 16	11	10	M	5	1	2	2	5	2	5	5	3	3	


P 17	11	10	F	4	4	4	1	3	2	2	1	5	4	
+ 				----^--------------------------------------------------------------------
M 17	11	10	F	1	3	3	1	3	5	4	5	4	5	


P 18	11	10	M	4	5	1	4	2	5	5	2	5	2	
+ 				-------------------------------------------------------------------------
M 18	11	10	M	5	1	2	2	5	2	5	5	3	3	


P 19	11	10	F	5	4	4	1	3	2	2	1	5	4	
+ 				-------------------------------------------------------------------------
M 19	11	10	F	5	1	2	2	5	2	5	5	3	3	


P 20	12	10	F	5	4	4	1	3	2	2	2	5	1	
+ 				-------------------------------------------------------------------------
M 20	12	10	F	1	3	3	1	3	5	4	5	4	5	


P 21	11	13	F	5	4	4	1	2	5	5	2	5	2	
+ 				--------------------v-------|-------------------------------v------------
M 21	11	13	F	5	4	4	0	3	2	2	1	5	4	


P 22	16	14	F	5	1	2	2	5	2	5	5	3	3	
+ 				------------------------------------v------------------------------------
M 22	16	14	F	5	1	2	2	5	2	2	1	5	4	


P 23	16	15	F	5	4	4	1	3	2	2	2	5	2	
+ 				-------------------------------------------------------------------------
M 23	16	15	F	5	4	4	1	3	2	2	1	5	2	


P 24	16	17	M	5	4	4	1	3	2	2	2	5	2	
+ 				----v-------v------------------------------------------------------------
M 24	16	17	M	4	3	4	1	3	2	2	1	5	4	


P 25	18	17	F	5	1	2	2	5	2	5	5	3	3	
+ 				-------------------------------------------------------------------------
M 25	18	17	F	4	4	4	1	3	2	2	1	5	4	


P 26	24	23	F	4	4	4	1	3	2	2	2	5	2	
+ 				----^--------------------------------------------------------------------
M 26	24	23	F	5	4	4	1	3	2	2	1	5	2	


P 27	24	25	F	5	4	4	1	3	2	2	1	5	4	
+ 				----v---------------^----------------------------------------------------
M 27	24	25	F	5	4	4	1	3	2	2	1	5	4	


RECOMBINATIONS	HAPLOTYPES WITH r RECOMB:
EXPECTED  SEEN	r=0	r=1	r=2	r=3	r>3
---------------------------------------------------
19.80	   16	32	9	2	1	0


The Log-likelihood of this assignment (without gene frequencies) is: -109.866323.